SigHunt: Horizontal gene transfer finder optimized for eukaryotic genomes
Kamil S. Jaroň, Jiří Moravec, Natália Martínková
Institute of Biostatistics and Analyses, Faculty of Medicine and the Faculty of Science, Masaryk University, Brno, Czech Republic
Institute of Vertebrate Biology, Academy of Sciences of the Czech Republic, Brno, Czech Republic
Jaroň, K. S,, Moravec, J, Martínková, N. SigHunt: Horizontal gene transfer finder optimized for eukaryotic genomes [online]. 2013. Available from: http://www.iba.muni.cz/index-en.php?pg=research--data-analysis-tools--sighunt
SigHunt analyses genomic signature of a DNA sequence and outputs the score DIAS. It consists of several tools:
- SigHunter -- batch program written in C that reads a fasta file and outputs genomic signature for specified, sequential windows of the DNA sequence.
- SigHunt.r -- R functions that analyse genomic signatures provided by SigHunter
- Discriminator -- R script for finding the most informative tetranucleotides with the TES
- slaver.r -- R script written for easy manipulation of a large number of sequences
source code (ZIP archive, 27 kB).